Unit Profile Correction added on 08-08-18
Add to Exam details 'Closed Book Exam' , 'Non Programmable calculator allowed, no text retrieval, silent only' 'Dictionary allowed, non electronic, concise, direct translation only (dictionary must not contain any notes or comments)'
Overview
Molecular and cellular pathology involves the study of disease processes at the molecular level and allows diagnosis of disease through the detection of genetic mutations, dysregulated gene expression and non functional or cytotoxic proteins. In this unit, you will understand the role of cellular genetic material and associated genetic rearrangements and mutations. You will explore the application of molecular techniques, such polymerase chain reaction and next generation sequencing, and their revolutionary impact on diagnostic testing.
Details
Pre-requisites or Co-requisites
Prerequisite: BIOL12106 Molecular Biology
Important note: Students enrolled in a subsequent unit who failed their pre-requisite unit, should drop the subsequent unit before the census date or within 10 working days of Fail grade notification. Students who do not drop the unit in this timeframe cannot later drop the unit without academic and financial liability. See details in the Assessment Policy and Procedure (Higher Education Coursework).
Offerings For Term 2 - 2018
Attendance Requirements
All on-campus students are expected to attend scheduled classes – in some units, these classes are identified as a mandatory (pass/fail) component and attendance is compulsory. International students, on a student visa, must maintain a full time study load and meet both attendance and academic progress requirements in each study period (satisfactory attendance for International students is defined as maintaining at least an 80% attendance record).
Recommended Student Time Commitment
Each 6-credit Undergraduate unit at CQUniversity requires an overall time commitment of an average of 12.5 hours of study per week, making a total of 150 hours for the unit.
Class Timetable
Assessment Overview
Assessment Grading
This is a graded unit: your overall grade will be calculated from the marks or grades for each assessment task, based on the relative weightings shown in the table above. You must obtain an overall mark for the unit of at least 50%, or an overall grade of ‘pass’ in order to pass the unit. If any ‘pass/fail’ tasks are shown in the table above they must also be completed successfully (‘pass’ grade). You must also meet any minimum mark requirements specified for a particular assessment task, as detailed in the ‘assessment task’ section (note that in some instances, the minimum mark for a task may be greater than 50%). Consult the University’s Grades and Results Policy for more details of interim results and final grades.
All University policies are available on the CQUniversity Policy site.
You may wish to view these policies:
- Grades and Results Policy
- Assessment Policy and Procedure (Higher Education Coursework)
- Review of Grade Procedure
- Student Academic Integrity Policy and Procedure
- Monitoring Academic Progress (MAP) Policy and Procedure – Domestic Students
- Monitoring Academic Progress (MAP) Policy and Procedure – International Students
- Student Refund and Credit Balance Policy and Procedure
- Student Feedback – Compliments and Complaints Policy and Procedure
- Information and Communications Technology Acceptable Use Policy and Procedure
This list is not an exhaustive list of all University policies. The full list of University policies are available on the CQUniversity Policy site.
- Describe the molecular basis of disease, in terms of gene mutations or rearrangements, and their detection
- Describe the relationship of disease to epigenetic modification of the genome
- Explain the process of identifying genetic changes and their significance
- Explain the use of molecular pathology in disease diagnosis and / or prevention and treatment, including the development of personalised medicines.
The learning outcomes achieved are linked to the objectives of the accrediting body, Australian Institute of Medical Scientists (AIMS).
Alignment of Assessment Tasks to Learning Outcomes
| Assessment Tasks | Learning Outcomes | |||
|---|---|---|---|---|
| 1 | 2 | 3 | 4 | |
| 1 - Group Work - 40% | ||||
| 2 - Examination - 60% | ||||
Alignment of Graduate Attributes to Learning Outcomes
| Graduate Attributes | Learning Outcomes | |||
|---|---|---|---|---|
| 1 | 2 | 3 | 4 | |
| 1 - Communication | ||||
| 2 - Problem Solving | ||||
| 3 - Critical Thinking | ||||
| 4 - Information Literacy | ||||
| 5 - Team Work | ||||
| 6 - Information Technology Competence | ||||
| 7 - Cross Cultural Competence | ||||
| 8 - Ethical practice | ||||
| 9 - Social Innovation | ||||
| 10 - Aboriginal and Torres Strait Islander Cultures | ||||
Alignment of Assessment Tasks to Graduate Attributes
| Assessment Tasks | Graduate Attributes | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | |
| 1 - Group Work - 40% | ||||||||||
| 2 - Examination - 60% | ||||||||||
Textbooks
Molecular Pathology: The Molecular Basis of Human Disease
2nd edition (2017)
Authors: Coleman, W & Tsongalis, G
Academic Press
San Diego San Diego , CA , USA
ISBN: 9780128027615
Binding: Hardcover
IT Resources
- CQUniversity Student Email
- Internet
- Unit Website (Moodle)
All submissions for this unit must use the referencing style: Harvard (author-date)
For further information, see the Assessment Tasks.
p.strappe@cqu.edu.au
Module/Topic
Introduction to basic concepts in Molecular pathology
Chapter
Chapter 1 and 2 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom Tutorial (Recorded)
Welcome to the Unit and an overview of subject content, learning materials and assessments
Module/Topic
'Omics' Technologies supporting molecular diagnosis
Chapter
Chapter 7 and 9 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Module/Topic
Epigenetics and Human disease
Chapter
Chapter 8 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 2
Module/Topic
Molecular basis of Cardiovascular disease
Chapter
Chapter 14 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 3
Module/Topic
Molecular basis of blood disorders
Chapter
Chapter 15 and 16 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 4
Module/Topic
Molecular basis of pulmonary disease
Chapter
Chapter 18 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Module/Topic
Molecular basis of colorectal, prostate and breast cancer
Chapter
Chapter 19, 25 and 26 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 5
Module/Topic
Molecular basis of Liver and Kidney Disease
Chapter
Chapter 20 and 24 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 6
Module/Topic
Molecular basis of skin disease
Chapter
Chapter 27 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 7
Portfolio Assignment Due: Week 8 Monday (3 Sept 2018) 11:45 pm AEST
Module/Topic
Molecular basis of diseases of the nervous system
Chapter
Chapter 29 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 8
Module/Topic
Molecular Basis of Musculoskeletal disease
Chapter
Chapter 28 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 9
Module/Topic
Molecular basis of diseases of the exocrine and endocrine system
Chapter
Chapter 21 and 22 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 10
Module/Topic
Revision
Chapter
All chapters highlighted for weeks 1 to 11 (Molecular Pathology,Molecular Basis of Human disease, Coleman and Tsongalis, 2nd Ed)
Events and Submissions/Topic
Rockhampton Lecture and Zoom tutorial on content from week 11
Module/Topic
Chapter
Events and Submissions/Topic
Zoom tutorial Revision
Module/Topic
Chapter
Events and Submissions/Topic
The unit coordinator for BMSC12012 is Dr Padraig Strappe, Students are requested to utilise the Moodle Q and A forum for subject content related questions. If the query is of a personal nature please email Dr Strappe directly p.strappe@cqu.edu.au or phone 07 49306499.
Weekly lectures and tutorials will be delivered from the Rockhampton campus and these will be recorded and available on the Moodle site.
On line zoom tutorials will also be provided and Zoom meeting ID's will be posted on the Moodle site. The tutorials will focus on the weekly study questions which will be available on the Moodle site and to obtain the most benefit from the tutorial it is recommended that you listen to the recorded lectures and attempt study questions beforehand.
To give yourself the best chance of success for this unit please ensure you that you undertake all additional readings and activities that are provided to you.
As per Australian educational standards, you are expected to commit 150 hours of engagement to your study of this unit. This is broken down as
2-3 hours per week watching recorded lectures and revising the content through study notes
3-4 hours per week completing the weekly study questions
1-2 hours per week attending the weekly tutorial and reflecting on answers to study questions
3-4 hours per week preparing your assessments or studying for your exams
1 Group Work
Assessment Type
Written Assessment
Task Description
This assessment is group based and groups of three students (3) will be assigned by the unit co-coordinator in week 1 and details of group members will be posted on the Moodle site. Each group will be assigned a specific disease / pathological disorder.
Increased understanding of disease pathogenesis at the cellular and molecular level leads to the discovery of novel biomarkers to enhance diagnosis and new targets for therapeutics. In this assignment you will be required to produce a comprehensive review of molecular advances associated with a particular disease in terms of (A) Pathogenesis, (B) Diagnosis and (C) Treatment.
For each of these 3 sections you will be required to
- Write between a 2000 to 2500 word essay supported by references (up to ten references) outling advances in either understanding disease pathology, laboratory based diagnosis or therapeutic strategies
- Review and critique in detail one scientific paper which has contributed to advanced knowledge associated with each section (Pathogenesis, Diagnosis and Treatment).
The final portfolio will be a combination of the three essays and three paper critiques together with an Introduction, summary and conclusion section.
Your critical appraisal of a major scientific paper should include a
- Summary of the outcomes of the described research,
- How these findings were a significant advance in either pathogenesis/diagnosis/treatment,
- What methodology was used and what further developments have occurred based on the original paper.
The paper critique is expected to be concise , between 750 and 1000 words.
Examples of specific diseases available for this assignment will include but are not limited to
- Diabetic Nephropathy
- liver Cirrhosis
- Pulmonary Arterial Hypertension
- Multiple Sclerosis, Prostate Cancer, Acute Myeloblastic lymphoma
- Chronic wound healing
- Chronic heart failure
- Paget's disease of bone
An individual 'Wiki' will be available on the Moodle site for each group to facilaitate group collaboration for the assessment task, production of a draft form and final submission.
Assessment
Group based assignments can provide enhanced learning through collaborative generation of ideas, delegation of tasks and presentation
The group based assessment contributes to 40% of the overall mark for this subject and assessment will be based on
(1) The overall quality of the groups portfolio (30%).
(2) Assessment of each individuals contribution to the portfolio (10%).
60 marks is available for each section and broken down as follows
- 20 marks for the scientific paper critique
- 40 marks for the review
- Finally the overall contribution of each individual to group work as assessed by the peer questionaire (20 marks)
For part 1,assessment a detailed marking rubric will be available on the Moodle site
For part 2, assessment of individual contribution to the team will be performed by evidence of activity on the wiki and use of a peer review questionnaire, where each team can rate other group members by their team participation. This then feeds back to give a score for team participation to each student.
Week 8 Monday (3 Sept 2018) 11:45 pm AEST
Week 10 Monday (17 Sept 2018)
The portfolio assessment is an opportunity to further research the contribution that molecular and cell biology has made to understanding a specific disease together with advances in diagnostic technology and treatment.
A detailed marking rubric will be available on the unit Moodle site, a brief overview of assessment criteria are as follows
A total of 200 marks are available for this assessment
The overall review is composed of 3 sections relating to Pathogenesis, Diagnosis and Treatment, and each section will also contain an accompanying critique of a scientific paper (3 x 60 marks)
60 marks is available for each section and broken down as follows
- 20 marks for the scientific paper critque composed of 1:clarity of aims and objectives (5 marks), 2: Summary of Methodology (5 marks), 3: Significance of paper (10 marks)
- 40 marks for the review composed of Introduction (10 marks), description of scientific advances (15 marks), Layout and organisation (10 marks), appropriate referencing (5 marks)
- Finally the overall contribution of each individual to group work as assessed by the peer questionaire (20 marks)
Weighting
40%
- Describe the molecular basis of disease, in terms of gene mutations or rearrangements, and their detection
- Describe the relationship of disease to epigenetic modification of the genome
- Explain the process of identifying genetic changes and their significance
- Explain the use of molecular pathology in disease diagnosis and / or prevention and treatment, including the development of personalised medicines.
- Communication
- Problem Solving
- Critical Thinking
- Information Literacy
- Team Work
- Ethical practice
Examination
As a CQUniversity student you are expected to act honestly in all aspects of your academic work.
Any assessable work undertaken or submitted for review or assessment must be your own work. Assessable work is any type of work you do to meet the assessment requirements in the unit, including draft work submitted for review and feedback and final work to be assessed.
When you use the ideas, words or data of others in your assessment, you must thoroughly and clearly acknowledge the source of this information by using the correct referencing style for your unit. Using others’ work without proper acknowledgement may be considered a form of intellectual dishonesty.
Participating honestly, respectfully, responsibly, and fairly in your university study ensures the CQUniversity qualification you earn will be valued as a true indication of your individual academic achievement and will continue to receive the respect and recognition it deserves.
As a student, you are responsible for reading and following CQUniversity’s policies, including the Student Academic Integrity Policy and Procedure. This policy sets out CQUniversity’s expectations of you to act with integrity, examples of academic integrity breaches to avoid, the processes used to address alleged breaches of academic integrity, and potential penalties.
What is a breach of academic integrity?
A breach of academic integrity includes but is not limited to plagiarism, self-plagiarism, collusion, cheating, contract cheating, and academic misconduct. The Student Academic Integrity Policy and Procedure defines what these terms mean and gives examples.
Why is academic integrity important?
A breach of academic integrity may result in one or more penalties, including suspension or even expulsion from the University. It can also have negative implications for student visas and future enrolment at CQUniversity or elsewhere. Students who engage in contract cheating also risk being blackmailed by contract cheating services.
Where can I get assistance?
For academic advice and guidance, the Academic Learning Centre (ALC) can support you in becoming confident in completing assessments with integrity and of high standard.
What can you do to act with integrity?
